Figured I'd post something, it's been a while.
Still working on the EVK1104 board, if anyone tells you it's easy to switch from AVR 8bit to AVR32 bit processors they are lying!
I'm finaly getting the hang of the internals of the processor. It takes alot of read of spec sheets and reading the framework code to get a grasp of things.
The current dev is going to use the SD card slot for MassStorage, the LCD for display and the QTouch buttons for input. So far I have the MassStorage portion of the CD Emulator and some menu commands working. Within a couple of days I'll have the CD emulation code working.